Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs11536974 chr20:36992124 C/T 8.88E-16 368 19.95 18.8 0.53 KM Plot
LIHC rs11536987 chr20:37000749 G/A 1.67E-15 363 20.03 18.8 0.53 KM Plot
LIHC rs11536990 chr20:37001274 T/C 1.78E-15 362 20.03 18.8 0.53 KM Plot
LIHC rs115999861 chr5:147028293 T/C 1.84E-5 365 20.05 16.2 4.25 KM Plot
LIHC rs116729113 chr5:126172804 C/G 3.42E-5 364 19.83 12.17 2.23 KM Plot
LIHC rs11674211 chr2:37167497 A/G 1.1E-5 363 20.5 12.17 8.73 KM Plot
LIHC rs11676225 chr2:37126159 C/G 8.8E-6 368 8.73 12.17 20.45 KM Plot
LIHC rs11678303 chr2:37122136 C/T 8.8E-6 368 20.45 12.17 8.73 KM Plot
LIHC rs11682966 chr2:37121894 T/C 8.8E-6 368 20.45 12.17 8.73 KM Plot
LIHC rs11685600 chr2:37190392 G/C 1.05E-5 358 20.45 13.2 8.73 KM Plot
LIHC rs11686605 chr2:37164743 T/G 1.1E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs11690477 chr2:37223886 C/T 2.36E-5 363 20.27 14.9 8.73 KM Plot
LIHC rs11691236 chr2:37167442 T/C 1.1E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs117747451 chr2:37159794 G/C 1.1E-5 366 20.45 12.17 8.73 KM Plot
LIHC rs11844511 chr14:73692895 A/T 1.72E-6 364 20.27 12.1 4.93 KM Plot